Download
Data & archive
The processed data, lineage trees, and analysis tables are archived on Zenodo. Links below point to the record; individual files can be downloaded there.
Open Zenodo record ↗
Zenodo record is a placeholder — update zenodoRecordUrl in
src/config/site.ts once the DOI is minted.
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Processed single-cell atlas
AnnData (.h5ad) with transcriptomes, cell-type annotations, and embryo/stage metadata.
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Reconstructed lineage trees
Per-embryo lineage trees with resolved cell divisions (Newick / TreeData).
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Lineage linkage matrices
Cell-type coupling matrices underlying the Linkage heatmap.
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Fate-flow tables
Progenitor-to-fate flow tables underlying the Fate Sankey.
Cite this dataset
Author A, Author B, … Weissman J.S.. A lineage-resolved cell fate map of mouse gastrulation and early organogenesis. Journal (year). doi:10.0000/mela.2026
BibTeX
@article{mela2026,
title = {A lineage-resolved cell fate map of mouse gastrulation and early organogenesis},
author = {Author A, Author B, … Weissman J.S.},
journal = {Journal (year)},
year = {2026},
doi = {10.0000/mela.2026}
}